Journal: PLOS ONE

Article Title: Altered GC- and AT-biased genotypes of Ophiocordyceps sinensis in the stromal fertile portions and ascospores of natural Cordyceps sinensis

doi: 10.1371/journal.pone.0286865

Figure Lengend Snippet: GT refers to genotype. Genotypes #1‒2 and #13‒14 are GC-biased O . sinensis genotypes, and Genotypes #4‒6 and #15‒17 are AT-biased O . sinensis genotypes. The GC and AT contents of the 17 O . sinensis genotypes are shown in . The underlined sequences in black represent primers for the first-step PCR. Extension primers 067721–477, 067721–531, 067740–324, 067744–324 (RC, reverse complement) and 067740–328 (RC) in brown were used for SNP mass spectrometry genotyping to distinguish between genotypes of O . sinensis . Arrows indicate the directions of the primer extension reactions toward the SNP alleles in brown. “-” refers to an identical base, and spaces refer to unmatched sequence gaps.

Article Snippet: The MassARRAY SNP MALDI-TOF MS genotyping experiments were performed by a service company, CapitalBio Co., in Beijing, China.

Techniques: Mass Spectrometry, Sequencing

Journal: PLOS ONE

Article Title: Altered GC- and AT-biased genotypes of Ophiocordyceps sinensis in the stromal fertile portions and ascospores of natural Cordyceps sinensis

doi: 10.1371/journal.pone.0286865

Figure Lengend Snippet: SNP extension primers for MassARRAY MALDI-TOF MS genotyping.

Article Snippet: The MassARRAY SNP MALDI-TOF MS genotyping experiments were performed by a service company, CapitalBio Co., in Beijing, China.

Techniques: Sequencing

Journal: Human reproduction (Oxford, England)

Article Title: Genetic variation in tumour necrosis factor and lymphotoxin is not associated with endometriosis in an Australian sample.

doi: 10.1093/humrep/dem182

Figure Lengend Snippet: Figure 1: Single-nucleotide polymorphisms (SNPs) rs1800630 (-863A/C) genotyped in 958 endometriosis cases and 959 controls using Seque- nom MassARRAY platform (a) Genotypes for rs1800630 (known as -863C/A) were not consistent with Hardy–Weinberg equilibrium, (b) the assay showed good clusters and mass spectra and (c) the sequence of rs1800630 where arrows indicate positions of two neighbouring variants located adjacent to rs1800630 and in the site of the extension primer

Article Snippet: In the Japanese studies, Asghar et al. (2004) found the TNF gene promoter SNP -1031T/C (rs1799964) was associated with stage IV endometriosis comprising 130 cases and 185 controls, whereas Teramoto et al. (2004) found a haplotype defined Figure 1: Single-nucleotide polymorphisms (SNPs) rs1800630 (-863A/C) genotyped in 958 endometriosis cases and 959 controls using Sequenom MassARRAY platform (a) Genotypes for rs1800630 (known as -863C/A) were not consistent with Hardy–Weinberg equilibrium, (b) the assay showed good clusters and mass spectra and (c) the sequence of rs1800630 where arrows indicate positions of two neighbouring variants located adjacent to rs1800630 and in the site of the extension primer D ow nloaded from https://academ ic.oup.com /hum rep/article/22/9/2389/609285 by guest on 04 August 2024 by SNPs -1031T/C, -863C/A and -857C/T (rs1799964, rs1800630 and rs1799724) was associated with endometriosis susceptibility in 123 endometriosis cases and 165 healthy con- trols.

Techniques: Sequencing